For my mixes, I generally use guitar rig.
For gigs, I use a Kendrick 2010 combo (a clone of the '59 fender bassman). Not all that great for metal, but good for just about anything else.
As far as pedals go, I have two favorites that I use at every possible opportunity.
The first is a modded TS-9.
The second is the Fuzzy Waters, a fuzz pedal designed by my cousin, Josh Rebick (for any of you who've seen me playing at MAGfest, odds are I was plying through this). Hands down the best fuzz I've ever played through; great tone, responds to spectacularly to playing dynamics. You can e-mail Josh to order one at rebickguitars at earthlink dot com. (edit: more details and a demo here)