Rest assured, the people at Nintendo have a document relating the timeline...
Not that we will see it ever...
Anyway, the way I understand it, and this is my vision of the timeline, it goes:
OoT/MM
Then the story splits into alternate timelines:
WW/PH if TP never happened and TP leading to another storyline (I think they removed WW because it messed everything up, however WW could remove Oracles out of the main timeline).
Afterwards it was Oracles, then LttP/Link's Awakening, and finally LoZ followed by Link's adventure.
I have not played 4 swords and Minish cap, but I have heard they may predate even OoT.