I honestly liked the transition, it was pretty sweet, it just doesn't feel like the acoustic guitar should have taken up all the space like that so suddenly. Maybe have the chords it plays come in a bit earlier or something.
Also, you could try maybe playing a filtered drum groove over that section. IDK if it'd work, that idea just sort of stuck in my head. If you don't do anything though, I won't hate you. This is a good remix overall, and the transition didn't bother me too much.
Thank you so much for picking this source! Happens to be one of my favorite by Kenji Yamamoto, and the Remix itself is absolutely awesome. Very well produced, and fun to listen to.